BigBWA: Approaching the Burrows-Wheeler Aligner to Big Data Technologies
José M. Abuín,
Juan C. Pichel,
Tomás F. Pena,
Jorge Amigo
August, 2015
Abstract
BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows-Wheeler Aligner (BWA). Important reductions in the execution times were observed when using this tool. In addition, BigBWA is fault tolerant and it does not require any modification of the original BWA source code.
Publication
In Bioinformatics.
Scientific Software Developer
My research interests include high performance and parallel computing applied to science, genomics and software optimization.