Jose M. Abuin web page
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Genomics
VeryFastTree: speeding up the estimation of phylogenies for large alignments through parallelization and vectorization strategies
Motivation: FastTree-2 is one of the most successful tools for inferring large phylogenies. With speed at the core of its design, there …
Cesar Piñeiro
,
José M. Abuín
,
Juan C. Pichel
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DOI
PASTASpark: multiple sequence alignment meets Big Data
Motivation: One basic step in many bioinformatics analyses is the Multiple Sequence Alignment (MSA). One of the state of the art tools …
José M. Abuín
,
Tomás F. Pena
,
Juan C. Pichel
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DOI
SparkBWA: Speeding Up the Alignment of High-Throughput DNA Sequencing Data
Next-generation sequencing (NGS) technologies have led to a huge amount of genomic data that need to be analyzed and interpreted. This …
José M. Abuín
,
Juan C. Pichel
,
Tomás F. Pena
,
Jorge Amigo
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DOI
BigBWA: Approaching the Burrows-Wheeler Aligner to Big Data Technologies
BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows-Wheeler Aligner (BWA). Important …
José M. Abuín
,
Juan C. Pichel
,
Tomás F. Pena
,
Jorge Amigo
Cite
DOI
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