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José M. Abuín

Scientific Software Developer

Mestrelab Research S.L.

Biography

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My name is José Manuel Abuín Mosquera (Rianxo, 1982). I am a software developer, computer engineer and researcher. Nowadays I work as Scientific Software Developer at Mestrelab Research S.L. and Bruker Daltonics SPR.

My main research interests are focused on the application of High Performance Computing and parallel programming to solve scientific problems, mainly in genomics and chemistry.

Interests

  • High Performance Computing
  • Genomics
  • Free/Libre and Open-Source Software (FLOSS)

Education

  • PhD in Information Technologies, 2017

    University of Santiago de Compostela

  • MSc in High Performance Computing, 2013

    University of Santiago de Compostela

  • BSc in Computer Science, 2012

    University of Santiago de Compostela

Skills

R

90%

Statistics

100%

Photography

10%

Experience

 
 
 
 
 

Scientific Software Developer

Mestrelab Research S.L.

Nov 2019 – Present Santiago de Compostela (Spain)
Development of high performance software for Surface Plasmon Resonance (SPR) analysis.
 
 
 
 
 

Post-doctoral researcher

Polytechnic Institute of Cávado and Ave (IPCA)

Oct 2018 – Nov 2019 Barcelos (Portugal)
Post-doctoral researcher in High Performance Computing and Big Data applied to Genomics. Languages and frameworks used: C/C++, Java, MPI and Spark
 
 
 
 
 

Post-doctoral researcher and Software Developer

Technological Institute for Industrial Mathematics (ITMATI)

Feb 2018 – Oct 2018 Santiago de Compostela (Spain)
  • Software development in Python, C++ and Fortran.
  • Development of prediction models for time series data.
 
 
 
 
 

Data Scientist

DXC Technology

Sep 2017 – Jan 2018 Santiago de Compostela (Spain)
Development of Big Data software to perform ETL processes by using Apache Spark.
 
 
 
 
 

Researcher and PhD student

Centro de Investigación en Tecnoloxías da Información (CiTIUS)

Jan 2014 – Aug 2017 Santiago de Compostela (Spain)
My research is based in:

  • Big Data applications performance with Hadoop and Spark.
  • High Performance Computing applied to Natural Language Processing and Genomics.
  • Genomics alignment by using Big Data and HPC technologies.
 
 
 
 
 

Software Developer

Applied Mathematics Department (University of Santiago de Compostela)

Feb 2013 – Jan 2014 Santiago de Compostela (Spain)
  • Development of gas networks simulator and optimizator by using Fortran language.
  • In charge of the development of a graphical interface for its use with the simulator and optimizator tool based in the open source project Quantum Gis (QGis). This interface is made with Pyhton and Qt (PyQt).
  • Code development for mathematical problems.
  • Development of paralell applications with OpenMp and MPI.
  • Implementation of the software simulator and optimizator software as SaaS (Software as a Service).
  • Administration of the Linux server where the gas simulator and optimizator software resides.
 
 
 
 
 

Projects technician & systems administrator

Galicia Supercomputing Centre (CESGA)

Feb 2013 – Apr 2008 Santiago de Compostela (Spain)
  • Linux servers administration (dom0 Xen servers and also virtual machines).
  • Development of web platforms based on Java and PHP.
  • Maintenance and development of an e-Learning platform based in the Chamilo Open Source platform, Aula Cesga.
  • Managing videoconferences through BigBlueButton.
  • Scripts programming using Python and Bash.

Accomplish­ments

Neural Networks and Deep Learning

See certificate

Blockchain Fundamentals

Formulated informed blockchain models, hypotheses, and use cases.
See certificate

Object-Oriented Programming in R: S3 and R6 Course

See certificate

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